Download MicrobeMS

MicrobeMS is available in two different editions: in (i) a stand-alone Windows 64-bit version requiring the Matlab Compiler Runtime (MCR) 64-bit and (ii) a Matlab pcode toolbox version requiring Matlab R2014 (Windows / Linux) or later.

Please note that you accept with downloading the license conditions of MicrobeMS.

MicrobeMS stand-alone (Windows)

NEW - Microbe MS 0.89 stand-alone 64-bit version (Windows, March 2025). This version requires Matlab's MCR 2023b (64-bit, Windows). Please use the following link to download the installer for this edition of MicrobeMS

    microbems.v.089.R2023b.setup.zip

NEW - Microbe MS 0.89 stand-alone 64-bit version (Windows, February 2025). This version requires Matlab's MCR 2014a (64-bit, Windows).

    microbems.v.089.R2014a.setup.zip

Microbe MS 0.84 stand-alone 64-bit version (Windows) from February 2022, requires Matlab's MCR 2014a.:

    microbems.v.084.setup.zip

MicrobeMS pcode (Windows and Linux)

MicrobeMS version 0.87 Matlab pcode for Windows and Linux (June 2024): requires Matlab R2022a or newer

    pcode-microbems-v087.zip

MicrobeMS version 0.82 Matlab pcode for Windows and Linux (December 2019):

    pcode-microbems-v082.zip

Test Spectra and Databases

MALDI-ToF mass spectra from the so called RKI ring trial study (zip archive, Bruker Daltonics MS data format):

    ring-trial-RKI-spectra.zip

MALDI-ToF mass spectra from the so called RKI ring trial study (Matlab data format, structure array spec),
see also Format of spectra multifiles (*.muf):

    RKI-ring-trial-spectra.muf

Peak list files obtained from mass spectra of strains of the so called RKI ring trial study (Matlab data format, structure array C),
see also Format of peaks list files (*.pkf) to obtain information on the file format

    RKI-ring-trial-test-data.pkf

MS Excel template required to define and transfer metadata items into MicrobeMS,
for file format information see Adding / editing metadata of MS data files:

    MALDI-Fields.xls

Download the most actual database versions with microbial MALDI-ToF MS, or synthetic LC-MS libraries:

    Mass Spectrometry Databases from the RKI at ZENODO