Download MicrobeMS: Difference between revisions
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MicrobeMS is available in two different editions: in (i) a stand-alone Windows 64-bit version requiring the Matlab Compiler Runtime (MCR) 64-bit and (ii) a Matlab pcode toolbox version requiring Matlab R2014 (Windows / Linux) or later. | MicrobeMS is available in two different editions: in (i) a stand-alone Windows 64-bit version requiring the Matlab Compiler Runtime (MCR) 64-bit and (ii) a Matlab pcode toolbox version requiring Matlab R2014 (Windows / Linux) or later. | ||
Please note that you accept with downloading the [http://wiki.microbe-ms.com/uploads/license.txt: license conditions] of MicrobeMS. | Please note that you accept with downloading the [http://wiki.microbe-ms.com/uploads/license.txt: license conditions] of MicrobeMS. | ||
=== MicrobeMS stand-alone (Windows) === | === MicrobeMS stand-alone (Windows) === | ||
<font color="red">'''NEW'''</font> - Microbe MS 0. | <font color="red">'''NEW'''</font> - Microbe MS 0.92 stand-alone 64-bit version (Windows, January 2026). This version requires Matlab's MCR 2023b (64-bit, Windows). Please use the following link to download the installer for this edition of MicrobeMS | ||
[https://wiki.microbe-ms.com/uploads/microbems.v.092.R2023b.setup.zip: '''microbems.v.092.R2023b.setup.zip'''] | |||
Microbe MS 0.90d stand-alone 64-bit version (Windows, July 2025). This version requires Matlab's MCR 2014a (64-bit, Windows). | |||
[https://wiki.microbe-ms.com/uploads/microbems.v. | [https://wiki.microbe-ms.com/uploads/microbems.v.090d.R2023b.setup.zip: '''microbems.v.090d.R2023b.setup.zip'''] | ||
Microbe MS 0.89 stand-alone 64-bit version (Windows, February 2025), requires Matlab's MCR 2014a (64-bit, Windows). | |||
[https://wiki.microbe-ms.com/uploads/microbems.v.089.R2014a.setup.zip: '''microbems.v.089.R2014a.setup.zip'''] | [https://wiki.microbe-ms.com/uploads/microbems.v.089.R2014a.setup.zip: '''microbems.v.089.R2014a.setup.zip'''] | ||
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=== MicrobeMS pcode (Windows and Linux) === | === MicrobeMS pcode (Windows and Linux) === | ||
<font color="red">'''NEW'''</font> - MicrobeMS version 0.92 Matlab pcode for Windows and Linux (January 2026): | |||
requires Matlab R2022a or newer | |||
[https://wiki.microbe-ms.com/uploads/pcode-microbems-v092.zip: '''pcode-microbems-v092.zip'''] | |||
MicrobeMS version 0.87 Matlab pcode for Windows and Linux (June 2024): | MicrobeMS version 0.87 Matlab pcode for Windows and Linux (June 2024): | ||
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MS Excel template required to define and transfer metadata items into MicrobeMS,<br> | MS Excel template required to define and transfer metadata items into MicrobeMS,<br> | ||
for file format information see [ | for file format information see [[Adding / Editing Metadata of MALDI-TOF Mass Spectral Data|Adding / editing metadata of MS data files]]: | ||
[https://wiki.microbe-ms.com/uploads/MALDI-Fields.xls: '''MALDI-Fields.xls'''] | [https://wiki.microbe-ms.com/uploads/MALDI-Fields.xls: '''MALDI-Fields.xls'''] | ||
Latest revision as of 10:55, 26 January 2026
MicrobeMS is available in two different editions: in (i) a stand-alone Windows 64-bit version requiring the Matlab Compiler Runtime (MCR) 64-bit and (ii) a Matlab pcode toolbox version requiring Matlab R2014 (Windows / Linux) or later.
Please note that you accept with downloading the license conditions of MicrobeMS.
MicrobeMS stand-alone (Windows)
NEW - Microbe MS 0.92 stand-alone 64-bit version (Windows, January 2026). This version requires Matlab's MCR 2023b (64-bit, Windows). Please use the following link to download the installer for this edition of MicrobeMS
microbems.v.092.R2023b.setup.zip
Microbe MS 0.90d stand-alone 64-bit version (Windows, July 2025). This version requires Matlab's MCR 2014a (64-bit, Windows).
microbems.v.090d.R2023b.setup.zip
Microbe MS 0.89 stand-alone 64-bit version (Windows, February 2025), requires Matlab's MCR 2014a (64-bit, Windows).
microbems.v.089.R2014a.setup.zip
Microbe MS 0.84 stand-alone 64-bit version (Windows) from February 2022, requires Matlab's MCR 2014a.:
microbems.v.084.setup.zip
MicrobeMS pcode (Windows and Linux)
NEW - MicrobeMS version 0.92 Matlab pcode for Windows and Linux (January 2026): requires Matlab R2022a or newer
pcode-microbems-v092.zip
MicrobeMS version 0.87 Matlab pcode for Windows and Linux (June 2024): requires Matlab R2022a or newer
pcode-microbems-v087.zip
MicrobeMS version 0.82 Matlab pcode for Windows and Linux (December 2019):
pcode-microbems-v082.zip
Test Spectra and Databases
MALDI-ToF mass spectra from the so called RKI ring trial study (zip archive, Bruker Daltonics MS data format):
ring-trial-RKI-spectra.zip
MALDI-ToF mass spectra from the so called RKI ring trial study (Matlab data format, structure array spec),
see also Format of spectra multifiles (*.muf):
RKI-ring-trial-spectra.muf
Peak list files obtained from mass spectra of strains of the so called RKI ring trial study (Matlab data format, structure array C),
see also Format of peaks list files (*.pkf) to obtain information on the file format
RKI-ring-trial-test-data.pkf
MS Excel template required to define and transfer metadata items into MicrobeMS,
for file format information see Adding / editing metadata of MS data files:
MALDI-Fields.xls
Download the most actual database versions with microbial MALDI-ToF MS, or synthetic LC-MS libraries:
Mass Spectrometry Databases from the RKI at ZENODO