Download MicrobeMS: Difference between revisions
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=== MicrobeMS stand-alone (Windows) === | === MicrobeMS stand-alone (Windows) === | ||
Microbe MS 0. | <font color="red">'''NEW'''</font> - Microbe MS 0.90d stand-alone 64-bit version (Windows, July 2025). This version requires Matlab's MCR 2023b (64-bit, Windows). Please use the following link to download the installer for this edition of MicrobeMS | ||
[ | [https://wiki.microbe-ms.com/uploads/microbems.v.090d.R2023b.setup.zip: '''microbems.v.090d.R2023b.setup.zip'''] | ||
Microbe MS 0. | Microbe MS 0.89 stand-alone 64-bit version (Windows, February 2025). This version requires Matlab's MCR 2014a (64-bit, Windows). | ||
[ | [https://wiki.microbe-ms.com/uploads/microbems.v.089.R2014a.setup.zip: '''microbems.v.089.R2014a.setup.zip'''] | ||
Microbe MS 0. | Microbe MS 0.84 stand-alone 64-bit version (Windows) from February 2022, requires Matlab's MCR 2014a.: | ||
[ | [https://wiki.microbe-ms.com/uploads/microbems.v.084.setup.zip: '''microbems.v.084.setup.zip'''] | ||
=== MicrobeMS pcode (Windows and Linux) === | === MicrobeMS pcode (Windows and Linux) === | ||
MicrobeMS version 0.87 Matlab pcode for Windows and Linux (June 2024): | |||
requires Matlab R2022a or newer | requires Matlab R2022a or newer | ||
[ | [https://wiki.microbe-ms.com/uploads/pcode-microbems-v087.zip: '''pcode-microbems-v087.zip'''] | ||
MicrobeMS version 0.82 Matlab pcode for Windows and Linux (December 2019): | MicrobeMS version 0.82 Matlab pcode for Windows and Linux (December 2019): | ||
[ | [https://wiki.microbe-ms.com/uploads/pcode-microbems-v082.zip: '''pcode-microbems-v082.zip'''] | ||
=== Test Spectra and Databases === | === Test Spectra and Databases === | ||
MALDI- | MALDI-ToF mass spectra from the ''so called'' [https://pubmed.ncbi.nlm.nih.gov/26063856/ '''RKI ring trial study'''] (zip archive, Bruker Daltonics MS data format): | ||
[ | [https://wiki.microbe-ms.com/uploads/ring-trial-RKI-spectra.zip '''ring-trial-RKI-spectra.zip'''] | ||
MALDI- | MALDI-ToF mass spectra from the ''so called'' [https://pubmed.ncbi.nlm.nih.gov/26063856/ '''RKI ring trial study'''] (Matlab data format, structure array ''spec''), <br> | ||
see also [[Data_Format_of_Spectral_Multifiles| | see also [[Data_Format_of_Spectral_Multifiles|Format of spectra multifiles (*.muf)]]: | ||
[ | [https://wiki.microbe-ms.com/uploads/RKI-ring-trial-spectra.muf: '''RKI-ring-trial-spectra.muf'''] | ||
Peak list files obtained from mass spectra of strains of '' | Peak list files obtained from mass spectra of strains of the ''so called'' [https://pubmed.ncbi.nlm.nih.gov/26063856/ '''RKI ring trial study'''] (Matlab data format, structure array ''C''),<br> | ||
see also [[Data_Format_of_Peak_List_Files| | see also [[Data_Format_of_Peak_List_Files|Format of peaks list files (*.pkf)]] to obtain information on the file format | ||
[ | [https://wiki.microbe-ms.com/uploads/RKI-ring-trial-test-data.pkf: '''RKI-ring-trial-test-data.pkf'''] | ||
MS Excel template required to define and transfer metadata items into MicrobeMS,<br> | MS Excel template required to define and transfer metadata items into MicrobeMS,<br> | ||
for file format information see [[Adding / Editing Metadata of MALDI-TOF Mass Spectral Data]]: | for file format information see [[Adding / Editing Metadata of MALDI-TOF Mass Spectral Data|Adding / editing metadata of MS data files]]: | ||
[ | [https://wiki.microbe-ms.com/uploads/MALDI-Fields.xls: '''MALDI-Fields.xls'''] | ||
Download the most actual database versions with microbial MALDI- | Download the most actual database versions with microbial MALDI-ToF MS, or synthetic LC-MS libraries: | ||
[[Mass_Spectrometry_Databases |Mass Spectrometry Databases from the RKI at ZENODO]] | [[Mass_Spectrometry_Databases |Mass Spectrometry Databases from the RKI at ZENODO]] | ||
Latest revision as of 10:02, 20 July 2025
MicrobeMS is available in two different editions: in (i) a stand-alone Windows 64-bit version requiring the Matlab Compiler Runtime (MCR) 64-bit and (ii) a Matlab pcode toolbox version requiring Matlab R2014 (Windows / Linux) or later.
Please note that you accept with downloading the license conditions of MicrobeMS.
MicrobeMS stand-alone (Windows)
NEW - Microbe MS 0.90d stand-alone 64-bit version (Windows, July 2025). This version requires Matlab's MCR 2023b (64-bit, Windows). Please use the following link to download the installer for this edition of MicrobeMS
microbems.v.090d.R2023b.setup.zip
Microbe MS 0.89 stand-alone 64-bit version (Windows, February 2025). This version requires Matlab's MCR 2014a (64-bit, Windows).
microbems.v.089.R2014a.setup.zip
Microbe MS 0.84 stand-alone 64-bit version (Windows) from February 2022, requires Matlab's MCR 2014a.:
microbems.v.084.setup.zip
MicrobeMS pcode (Windows and Linux)
MicrobeMS version 0.87 Matlab pcode for Windows and Linux (June 2024): requires Matlab R2022a or newer
pcode-microbems-v087.zip
MicrobeMS version 0.82 Matlab pcode for Windows and Linux (December 2019):
pcode-microbems-v082.zip
Test Spectra and Databases
MALDI-ToF mass spectra from the so called RKI ring trial study (zip archive, Bruker Daltonics MS data format):
ring-trial-RKI-spectra.zip
MALDI-ToF mass spectra from the so called RKI ring trial study (Matlab data format, structure array spec),
see also Format of spectra multifiles (*.muf):
RKI-ring-trial-spectra.muf
Peak list files obtained from mass spectra of strains of the so called RKI ring trial study (Matlab data format, structure array C),
see also Format of peaks list files (*.pkf) to obtain information on the file format
RKI-ring-trial-test-data.pkf
MS Excel template required to define and transfer metadata items into MicrobeMS,
for file format information see Adding / editing metadata of MS data files:
MALDI-Fields.xls
Download the most actual database versions with microbial MALDI-ToF MS, or synthetic LC-MS libraries:
Mass Spectrometry Databases from the RKI at ZENODO