All public logs

Combined display of all available logs of MicrobeMS Wiki. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).

• 10:20, 18 March 2023 Laschp talk contribs created page Identification Analysis by Means of LC-MS¹ and ''in silico'' Databases (Created page with "__FORCETOC__ == Introduction == Microbial identification analysis by means of LC-MS¹ data and an ''in silico'' database represents an alternative bottom-up proteomics approach that involves (i) efficient extraction of proteins from cultivated microbial samples, (ii) digestion by trypsin and (iii) LC-MS measurements. Next steps in the analytical pipeline are (iv) extraction of MS¹ data followed by (v) systematic tests of MS¹ data against a library of strai...")
• 10:19, 18 March 2023 Laschp talk contribs created page Mass Spectrometry Databases (Created page with "__FORCETOC__ == Introduction == Library-based MS approaches for microbial identification require labeled sets of microbial mass spectra. Starting with version 0.82 MicrobeMS can deal with experimental MALDI-TOF or LC-MS¹ mass spectra and the respective MS databases. <br> The RKI databases of microbial MALDI-TOF mass spectra contain mass spectral entries from highly pathogenic (biosafety level 3, BSL-3) bacteria such as ''Bacillus anthracis'', ''Yersinia pestis'',...")
• 10:18, 18 March 2023 Laschp talk contribs created page How to Obtain a License (Created page with " Once you have accepted all terms of the license agreement you can download a free version of MicrobeMS. In order to run MicrobeMS an additional license key file ('keygen.gen') must be obtained and copied into the toolbox directory of MicrobeMS. This individual license key is NOT included in the MicrobeMS installation package and will be send to you only on request. Please e-mail your request together with your name and an institutional address to the following e-mail...")
• 10:18, 18 March 2023 Laschp talk contribs created page MicrobeMS Wiki:General disclaimer (Created page with "MicrobeMS - A Matlab Toolbox for Analysis of Microbial MALDI-TOF Mass Spectra '''License Agreement''' MicrobeMS is willing to license this software to you only upon the condition that you accept all of the terms and conditions contained in the following license agreement. Please read the terms and conditions carefully as continuing with the setup procedure will indicate your acceptance of all of the terms and conditions of the license agreement ("agreement"). If you...")
• 10:17, 18 March 2023 Laschp talk contribs created page Install MicrobeMS (Created page with "__FORCETOC__ == Preface == MicrobeMS is a Matlab-based application which can be installed in two different versions (with basically the same functionality):<br> * The stand-alone version requires installation of the MATLAB Compiler Runtime (MCR R2014a 64-bit). * MicrobeMS as a Matlab pcode toolbox. For this a licensed version of Matlab will be required. == Install MicrobeMS as a stand-alone application (Windows) ==  <br> <b>Prerequisites</b> MicrobeMS is Matla...")
• 10:16, 18 March 2023 Laschp talk contribs created page MALDI-TOF Mass Spectrometry Database (Created page with "__FORCETOC__ == Introduction == Library-based MS approaches for microbial identification require labeled sets of microbial mass spectra. Starting with version 0.82 MicrobeMS can deal with experimental MALDI-TOF or LC-MS¹ mass spectra and the respective MS databases. <br> The RKI databases of microbial MALDI-TOF mass spectra contain mass spectral entries from highly pathogenic (biosafety level 3, BSL-3) bacteria such as ''Bacillus anthracis'', ''Yersinia pestis'',...")
• 10:15, 18 March 2023 Laschp talk contribs created page Download MicrobeMS (Created page with "MicrobeMS is available in two different editions: in (i) a stand-alone Windows 64-bit version requiring the Matlab Compiler Runtime (MCR) 64-bit and (ii) a Matlab pcode toolbox version requiring Matlab R2014 (Windows / Linux) or later. Please note that you accept with downloading the [http://www.microbe-ms.com/microbe-ms/license.txt: license conditions] of MicrobeMS. === MicrobeMS stand-alone (Windows) === <font color="red">'''NEW'''</font> - Microbe MS 0.84 stand-al...")
• 10:15, 18 March 2023 Laschp talk contribs created page Screenshot of MicrobeMS (Created page with "1000px|thumb|Screenshot of main window of MicrobeMS v.082")
• 10:14, 18 March 2023 Laschp talk contribs created page Computer specification (Created page with "<b> Pcode toolbox of the MicrobeMS software (v.082)</b> * Processor: 32-bit or 64-bit CPU from Intel or AMD * Operating system: Microsoft Windows 7/8/8.1/10 (64-bit version prefered), or * LINUX, MicrobeMS has been tested under Debian version 10 (codenamed Buster) * Matlab R2014a (The Mathworks) or newer * The Statistics and the Bioinformatics Toolbox of Matlab (the latter toolbox will be required only for mzXML data import). * MicrobeMS will be installed as a Matlab t...")
• 10:13, 18 March 2023 Laschp talk contribs created page MicrobeMS - A Matlab Toolbox for Microbial Identification Based on Mass Spectrometry (Created page with "== Introduction == The MicrobeMS software package is a program specifically designed for the analysis of MALDI-TOF mass spectra of microbial samples. The MicrobeMS software was developed by [http://www.peter-lasch.de: Peter Lasch] at the [http://www.rki.de/EN/Home/homepage_node.html: Robert-Koch-Institute (RKI)] in Berlin/Germany and can be used to identify microbial strains and species based on their mass spectral patterns. The program is a comprehensive [http://www.ma...")